PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g002500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 123aa    MW: 13624.8 Da    PI: 8.7505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g002500.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.3e-054312355
                      HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55
                      L +l+P++      K + a++L +A+++I+ Lq
  Sopen04g002500.1  4 LETLIPNC-----NKSDRASVLDQAIQHIQALQ 31
                      88999998.....699****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.30E-5135No hitNo description
PROSITE profilePS5088810.15130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-8241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-9245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MKVLETLIPN CNKSDRASVL DQAIQHIQAL QHQIQVMSMD RIRASTLVAA GRNQIMQSTL  60
HFNPYIGAIG YFFNFSNFSP MLSTGSEFPF LPLSVACNLL HPGPIMEAFT RGYASVAPPE  120
KRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-148HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360439.24e-71PREDICTED: transcription factor bHLH119-like isoform X1
RefseqXP_015170292.19e-72PREDICTED: transcription factor PIF5-like isoform X4
TrEMBLK4BNQ02e-80K4BNQ0_SOLLC; Uncharacterized protein
STRINGSolyc04g007430.1.16e-80(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1524888